PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047816
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 435aa    MW: 49639.8 Da    PI: 4.9002
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047816genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.2e-1165121155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  ++n  ++k+ +   ++++e Aa+ ++ a++k++g
  PGSC0003DMP400047816  65 SIYRGVTRHRWTGRYEAHLWDkSTWNSiQNKKGRQRAYDSEEAAARTYDLAALKYWG 121
                           57*******************6666999888888899******************98 PP

2AP252.61.1e-16164215155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I  ++    +k+ +lg++ t eeAa+a++ a+ +++g
  PGSC0003DMP400047816 164 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYSTQEEAAAAYDMAAIEYRG 215
                           89****99***********99654...4*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576118No hitNo description
SuperFamilySSF541711.63E-1365131IPR016177DNA-binding domain
CDDcd000182.73E-1665130No hitNo description
PfamPF008471.5E-865121IPR001471AP2/ERF domain
PROSITE profilePS5103217.62266129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-1066130IPR001471AP2/ERF domain
SMARTSM003804.9E-1966135IPR001471AP2/ERF domain
PRINTSPR003672.6E-66778IPR001471AP2/ERF domain
CDDcd000186.21E-16164225No hitNo description
SuperFamilySSF541715.82E-18164225IPR016177DNA-binding domain
PfamPF008471.6E-11164215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18165223IPR001471AP2/ERF domain
SMARTSM003808.4E-27165229IPR001471AP2/ERF domain
PROSITE profilePS5103218.452165223IPR001471AP2/ERF domain
PRINTSPR003672.6E-6205225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKKSPSFSCS SSSSSSSCIE QIHEETEKLN LKPKPKPRLK RASRAKKIVN ADSPSNNSST  60
VRRSSIYRGV TRHRWTGRYE AHLWDKSTWN SIQNKKGRQR AYDSEEAAAR TYDLAALKYW  120
GPTTILNFPV ERYSQEFEEM QRLTKEEYLA SLRRMSSGFS RGVSKYRGVA RHHHNGRWEA  180
RIGRVYGNKY LYLGTYSTQE EAAAAYDMAA IEYRGPNAVT NFDISRYADH LKKLREPNLL  240
TKEENTESSA EVQSNEVIEQ YQPVQQEENQ LDYQLAELAA EPIVVPKLEF TPALDSDEVT  300
QPKVLKLEFA ADIMKAKDHE EEEDYPWMNM YLDNTFDSLP VSDFSLDKPA DLMDLFNDNS  360
FDNNIDFNFY EQSSENEFNL NVFSDSMIID GIEADNEEVR NNLSISPTSS SSMSRTTSIS  420
NDMKDDGGLA SSTM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347702.10.0PREDICTED: ethylene-responsive transcription factor WRI1-like
SwissprotQ6X5Y61e-108WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLM1CML90.0M1CML9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000707350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91342227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-101AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]